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puzzle fault

last week got home in a rainstorm, soaked - so was the bike but it was running when I parked up

went to use it today and nothing, no click just the green neutral light and the red generator light slightly fading as i press the start button

battery flat i thought - but it was ok

starter stuck I thought - so rocked the bike in gear then took the starter off and replaced it - wasn't that

any ideas please?